BOINC@AUSTRALIA FORUM

  • April 12, 2021, 01:50:01 PM
  • Welcome, Guest
Please login or register.

Login with username, password and session length
Advanced search  

News:

BOINC@AUSTRALIA has a facebook page at https://www.facebook.com/groups/7742313626/
Come on by and have a look.

Pages: [1] 2   Go Down

Author Topic: Project News  (Read 56799 times)

kashi

  • Forum Moderator
  • Board Lord
  • *****
  • Aussie Karma: +690/-0
  • Offline Offline
  • Posts: 2894
Project News
« on: April 28, 2012, 06:07:21 PM »

What's new?

SIMAP facilitates eggNOG. Genome comparisons are a very powerful and versatile tool in modern molecular biology, as thousands of genomes have been sequenced during the last years. If protein sequences serve as items in comparative genomes, they are typically organized into orthologous groups of evolutionary directly related proteins. Calculations of such groups are very demanding and rely on large-scale sequence similarity data. One of the largest and most prominent databases of orthologous groups is eggNOG. The latest version 3.0 of eggNOG is based on protein similarity data from SIMAP. Our data has replaced time-consuming BLAST searches and provides an increased sensitivity compared to BLAST. We will be happy to continue the fruitful collaboration between eggNOG and SIMAP which is a typical example how SIMAP facilitates modern biological research. A paper describing eggNOG 3.0 has been published in the 2012 Database Issue of the journal Nucleic Acids Research (Fulltext).

If you check out eggNOG and wish to view proteins in tree format then you can go to Interactive Tree Of Life (ITOL) which is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout, which makes it easy to visualize mid-sized trees (up to several thousand leaves).

I hadn't seen this on the SIMAP webpage before, just thought some may be interested. It has helped motivate me to do some more SIMAP crunching when work is available in a few days. Badges add some interest and incentive, but not all good projects have badges.;D
Logged

Dingo

  • Founder BOINC@AUSTRALIA
  • ADMINISTRATOR
  • Board Lord
  • *****
  • Aussie Karma: +2517/-1
  • Offline Offline
  • Posts: 10178
    • Parliament Hill Webcam
Re: Project News
« Reply #1 on: July 02, 2012, 03:42:17 PM »

Simap has work at the moment for those that like that project   http://boincsimap.org/boincsimap/server_status.php
Logged

Have a look at the BOINC@AUSTRALIA Facebook Page and join and also the Twitter Page.

Proud Founder and member of BOINC@AUSTRALIA

HERE are my Primes from Primegrid

Have a look at my  Web Cam of Parliament House Ottawa, CANADA

WikiWill

  • Board Lord
  • ******
  • Aussie Karma: +409/-0
  • Offline Offline
  • Posts: 2035
    • home
Re: Project News
« Reply #2 on: July 02, 2012, 08:48:32 PM »

Simap has work at the moment for those that like that project   http://boincsimap.org/boincsimap/server_status.php

I'm all over it like brandy syrup on figs!
Logged

JugNut

  • Board Lord
  • ******
  • Aussie Karma: +835/-0
  • Offline Offline
  • Posts: 2634
Re: Project News
« Reply #3 on: July 02, 2012, 08:58:07 PM »

Me too.. (But without the figs)  ;D
Logged


 - Participated in AA's 27 - 55 & Team Challenge # 1.
 My team (Boinc@Australia) stat's
 My personal stat's


     Crunching today for a better tomorrow...

tazzduke

  • Information Member
  • Board Lord
  • *****
  • Aussie Karma: +1719/-0
  • Offline Offline
  • Posts: 2831
Re: Project News
« Reply #4 on: July 02, 2012, 10:43:05 PM »

Sorry but overloaded with other work at the moment, will give this batch a miss.  Maybe the next SIMAP batch we can do a mini aa is 7 day run.

Regards
Tazzduke
Logged





 AA 24 - 53 participant

WikiWill

  • Board Lord
  • ******
  • Aussie Karma: +409/-0
  • Offline Offline
  • Posts: 2035
    • home
Re: Project News
« Reply #5 on: July 30, 2012, 10:28:48 AM »

Hi SIMAP team, the next batch of work is being prepared for release this afternoon (0600 UTC approx) and should last a week.

We're currently ranked 21st. All help gratefully received in our assault on the Dutch Power Cows  v:
Logged

Dingo

  • Founder BOINC@AUSTRALIA
  • ADMINISTRATOR
  • Board Lord
  • *****
  • Aussie Karma: +2517/-1
  • Offline Offline
  • Posts: 10178
    • Parliament Hill Webcam
Re: Project News
« Reply #6 on: July 30, 2012, 01:25:57 PM »

Always ready for Simap I have it set to 1000% so it should get and run most times there is work.
Logged

Have a look at the BOINC@AUSTRALIA Facebook Page and join and also the Twitter Page.

Proud Founder and member of BOINC@AUSTRALIA

HERE are my Primes from Primegrid

Have a look at my  Web Cam of Parliament House Ottawa, CANADA

JugNut

  • Board Lord
  • ******
  • Aussie Karma: +835/-0
  • Offline Offline
  • Posts: 2634
Re: Project News
« Reply #7 on: July 30, 2012, 03:17:45 PM »

I'll be on it like white on rice.  :thumbsup:

Thanks 4 the heads up W.W.
Logged


 - Participated in AA's 27 - 55 & Team Challenge # 1.
 My team (Boinc@Australia) stat's
 My personal stat's


     Crunching today for a better tomorrow...

Scott T

  • Sr. Member
  • ****
  • Aussie Karma: +354/-0
  • Offline Offline
  • Posts: 331
    • Scott's Blog
Re: Project News
« Reply #8 on: July 30, 2012, 06:19:22 PM »

Similar to Dingo, I've got Simap (and LHC) set to a much higher priority than everything else so should crunch a fair slab as well - hoping enough to break a milestone this month around :)
Logged


AA 15 - 30, 32 - 41, 43 - 45

i7-3820 @ Stock 3.6GHz, 16GB RAM, GTX660 Ti, Win 8 64bit

LawryB

  • Board Lord
  • ******
  • Aussie Karma: +591/-0
  • Offline Offline
  • Posts: 2265
Re: Project News
« Reply #9 on: July 30, 2012, 09:37:11 PM »


On it tomorrow
Logged

JugNut

  • Board Lord
  • ******
  • Aussie Karma: +835/-0
  • Offline Offline
  • Posts: 2634
Re: Project News
« Reply #10 on: August 16, 2012, 02:33:39 AM »

Mid month SIMAP's get em' while there hot.....
Logged


 - Participated in AA's 27 - 55 & Team Challenge # 1.
 My team (Boinc@Australia) stat's
 My personal stat's


     Crunching today for a better tomorrow...

DougB

  • Sr. Member
  • ****
  • Aussie Karma: +97/-0
  • Offline Offline
  • Posts: 368
    • My Trips
Re: Project News
« Reply #11 on: August 16, 2012, 08:30:02 PM »

Their status currently reads there is 52 days work...that's huge for people who follow this project...

 :dance2:
Logged




AA10 to AA40; AA42 to AA46; AA49 to AA54

i7 5960x Win10 (64b)

WikiWill

  • Board Lord
  • ******
  • Aussie Karma: +409/-0
  • Offline Offline
  • Posts: 2035
    • home
Re: Project News
« Reply #12 on: August 16, 2012, 08:49:36 PM »

Already down to 50 43 days, but still a good feed.

From their forum news: "We will start with a batch of workunits that will need about 2 weeks for its calculation. Further batches will follow after the regular workunits in the beginning of September."
 :cheer1:
« Last Edit: August 17, 2012, 12:00:02 AM by WikiWill »
Logged

Dingo

  • Founder BOINC@AUSTRALIA
  • ADMINISTRATOR
  • Board Lord
  • *****
  • Aussie Karma: +2517/-1
  • Offline Offline
  • Posts: 10178
    • Parliament Hill Webcam
Re: Project News
« Reply #13 on: October 02, 2012, 12:43:20 AM »

Simap has about 35 days of work available.  There is also a BoincStats Challenge running that we are participating in.   :dance2:
Logged

Have a look at the BOINC@AUSTRALIA Facebook Page and join and also the Twitter Page.

Proud Founder and member of BOINC@AUSTRALIA

HERE are my Primes from Primegrid

Have a look at my  Web Cam of Parliament House Ottawa, CANADA

DougB

  • Sr. Member
  • ****
  • Aussie Karma: +97/-0
  • Offline Offline
  • Posts: 368
    • My Trips
Re: Project News
« Reply #14 on: October 02, 2012, 01:26:13 AM »

I'm on it... biggrin
Logged




AA10 to AA40; AA42 to AA46; AA49 to AA54

i7 5960x Win10 (64b)
Pages: [1] 2   Go Up
 

Page created in 0.068 seconds with 20 queries.